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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G196600.2.p | ||||||||
Common Name | PRUPE_ppa023041mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 39047.4 Da PI: 8.3211 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.2 | 4.7e-06 | 242 | 280 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Prupe.4G196600.2.p 242 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 280 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.894 | 231 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.97E-7 | 241 | 284 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-12 | 241 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0036 | 242 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-9 | 245 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MCINSRGEKA ETSFRSILQE NMNSNTNFHQ ENDQQLQWRD KLFAGGCGDS SNNEFKQMNR 60 GFSLDQTQFS PQYSSGDSTV TCQGLPSSFQ MDSGAALYGS PSTILQGLLG PHHDNQQPNS 120 APMNFPYQAN YGVNSSDQLL PPWSKVPQFL RTSPPKQPPQ SHLQFSNNAT FWNAPHEAAM 180 KDVRPSFFPS LQPQYPTARF EEKPKNISEV QESGAVGKKS GSETATKRPR NETSSPLPAF 240 KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL HEQVNVLSTP YMKSGAAIQH 300 QQNSDKSKDP DQGPKQDLRS RGLCLVPVSS TFPVTHGTTV DFWTPTFGGT FR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118054 | 8e-47 | AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14. | |||
GenBank | BT008580 | 8e-47 | BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007213019.1 | 0.0 | hypothetical protein PRUPE_ppa023041mg | ||||
Swissprot | Q8GXT3 | 2e-82 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | M5WXZ0 | 0.0 | M5WXZ0_PRUPE; Uncharacterized protein | ||||
STRING | VIT_19s0014g04670.t01 | 1e-170 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G196600.2.p |
Entrez Gene | 18778838 |